PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g030740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 358aa MW: 38524.8 Da PI: 5.6609 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.5e-07 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ + l+C+ + +lC +C ++ H Csa13g030740.1 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36 58***************************9954 PP | |||||||
2 | zf-B_box | 27.4 | 6.8e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Csa13g030740.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689*****************************66899999*99986 PP | |||||||
3 | CCT | 70 | 6e-24 | 290 | 333 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Csa13g030740.1 290 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 333 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.2E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.438 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.75E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.893 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3E-10 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.9E-18 | 290 | 332 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.767 | 290 | 332 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYFSDL 120 GGNGSREEEE EEAASWLLLP NPKTTTTTTT VAAKEVPGDS PEMNTGQQYL FSDPDPYLDL 180 DYGSVDPKVE SLEQNSSGTD GVVPVENRTV SFSTVNENCF ELDFTGGSKG FAYGGGYNCI 240 SHSVSSSSME VGVVPDGGSV ADVSYPYGGS ATSGADPGSQ RAVPLTSAER EARVMRYREK 300 RKNRKFEKTI RYASRKAYAE MRPRIKGRFA KRTDTSESND AVAHGGIFSG FGLVPTF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g030740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493757 | 0.0 | AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454822.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 0.0 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A178UN26 | 0.0 | A0A178UN26_ARATH; COL4 | ||||
STRING | XP_010454822.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2760 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 0.0 | CONSTANS-like 4 |