PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g028060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26614.1 Da    PI: 9.1124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g028060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.1e-182472350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                     ++ s++++ +  R  +++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa13g028060.1 24 LSSVSKKTTNLPMREDTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 72
                    5788999999********************************9746887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.4751467IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-91473IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-151697IPR002100Transcription factor, MADS-box
CDDcd002665.70E-192299No hitNo description
PfamPF003197.3E-132968IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTTKDDKTT RLLSVRNRRC FKKLSSVSKK TTNLPMREDT MFKKASELSI LCDVEVCVIY  60
YNRDGELVRT WPEDQSKVRD MAERFSKLND RERRKKSTNL SLFLNKKTGL KDKKTSFDIT  120
DNKFSEKVLE MEASLESTIP VFQDKLLWLQ NQTEPYQSPV VSSAGFFTPD PSFMSGGVSK  180
TEQYLSTPSL AQQHQSKFSV FLYNHDNGSF CQLPDSSVST FDPSTKLHYE F*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g028060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089827.11e-171PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H92e-71AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1198e-93R0H119_9BRAS; Uncharacterized protein
STRINGXP_010454635.11e-152(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27944.11e-78M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]