PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g025850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 239aa    MW: 26932.3 Da    PI: 6.1518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g025850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.49.4e-4361372128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     + GfrF Pt+eelv +yL++++eg++ +++++vi+ +d+++veP++Lp+    +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+  +
  Csa13g025850.1   6 TIGFRFYPTEEELVAFYLRNQLEGRSdVSVHRVIPVLDVFEVEPSHLPNmsgeRCRGDPEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGP 100
                     57**********************997788889***************545655556777*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++
  Csa13g025850.1 101 VFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137
                     ***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-465161IPR003441NAC domain
PROSITE profilePS5100546.6395162IPR003441NAC domain
PfamPF023653.4E-237136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MADEVTIGFR FYPTEEELVA FYLRNQLEGR SDVSVHRVIP VLDVFEVEPS HLPNMSGERC  60
RGDPEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG  120
KAPTGRKTKW KMNEYKAVDE TVTASTIPQV RHEFSLCRVY VTTGSSRAFD RRPPVGVLQP  180
ERMLTNEVAV AGTSSFRAES SPDTSFSGGE QHVDLSMNVD LVEGLTEPIW EWEQLSWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-32816723173NAC domain-containing protein 19
3swm_B3e-32816723173NAC domain-containing protein 19
3swm_C3e-32816723173NAC domain-containing protein 19
3swm_D3e-32816723173NAC domain-containing protein 19
3swp_A3e-32816723173NAC domain-containing protein 19
3swp_B3e-32816723173NAC domain-containing protein 19
3swp_C3e-32816723173NAC domain-containing protein 19
3swp_D3e-32816723173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g025850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454500.11e-177PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-147NAC90_ARATH; NAC domain-containing protein 90
TrEMBLR0FHF51e-152R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454500.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-138NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]