PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g024650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 898aa MW: 98685.5 Da PI: 6.2989 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 7.9e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + + + Csa13g024650.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DGK 218 99*****************************98888885.9************************************************5..467 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ Csa13g024650.1 219 AQLLLGIRRA 228 8889999997 PP | |||||||
2 | Auxin_resp | 118 | 8e-39 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+nS+Wr+L+ Csa13g024650.1 253 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 335 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-42 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 121 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.29E-19 | 126 | 227 | No hit | No description |
SMART | SM01019 | 3.1E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-34 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-9 | 768 | 856 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 770 | 863 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.36E-9 | 783 | 848 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 898 aa Download sequence Send to blast |
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 60 QTDCIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 120 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDSTWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI 240 SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI 300 FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT 360 PFYICPPPFF RPRFGGQPGM PDDETDMESA LKRAMPWLDN SSEMKDASST IFPGLSLVQW 420 MNMQQQNGQL PSAAAQPETQ FPRQVEQQQP PGLKGQNQQT LLQQKAHQAQ AQQIFQQSLL 480 EQPHLQFQLL QRLQQQQQQQ FLSPQSQLPH HQLQSQQLPA LSQGHQFPSS CTNNGLSTLQ 540 PPQMLVNRPQ EKQNPPVGGG VKAYSGITDG GDAPSSSTSP STNNCQISSS GFLNRSQSGP 600 AILIPDAAID MSGNLVQDLY GKSDMRLKQE LVGQQKSKAS LTDHHLEASA SGTSYGLDGG 660 DNNRQQNFLA PTFGLDGDSR NSLLGGPNVD NGFVPDTLLS RGYDSQKDLQ NMLSNYGGVT 720 NDIGTEMSTS AVRTQSFGVP NVPAISNDLA VNDAGVLGAG LWPAQTQRMR TYTKVQKRGS 780 VGRSIDVNRY RGYDELRHDL ARMFGIEGQL EDPQTSDWKL VYVDHENDIL LVGDDPWEEF 840 VNCVQSIKIL SSAEVQQMSL DGNFAGVPVT NQACSGGDSG NAWRGHYDDN SATSFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 21 | 356 | 51 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g024650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042195 | 0.0 | AF042195.1 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds. | |||
GenBank | AY669789 | 0.0 | AY669789.1 Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851206.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | P93022 | 0.0 | ARFG_ARATH; Auxin response factor 7 | ||||
TrEMBL | A0A3N6QIU7 | 0.0 | A0A3N6QIU7_BRACR; Auxin response factor | ||||
STRING | OMERI03G31460.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |