PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g022730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30831.6 Da PI: 9.0019 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g Csa13g022730.1 41 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 91 699*******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-13 | 41 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.41E-33 | 41 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.823 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 42 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-39 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MHPYKYVFST STDRFIHKKK KMERQQPQKQ KAKEKSKGNK TKFVGVRQRP SGKWVAEIKD 60 TTQKIRMWLG TFETAEEAAR AYDEAACLLR GSNTRTNFAN HFPNNSQLSL KIRNLLHQKQ 120 SMKQQQQQQH KPVSSFAECN IDYTSAATSL TTTTTTTTVM PLNDVYRPES SVIGLPETNG 180 HQHPYSWPLV SGLNHLVPMA QGGEETHGHL NDHNSTDQHL GLAEIERQIS ASLYAMNGPS 240 SYYDSMNAEY AIFDPTDPIW DLPSLSQLFC PT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 42 | 108 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g022730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | T29J13 | 0.0 | AF296838.1 Arabidopsis thaliana BAC T29J13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454261.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | Q6J9S1 | 1e-143 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | R0HAY2 | 1e-153 | R0HAY2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010454261.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-130 | related to AP2 11 |
Publications ? help Back to Top | |||
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