PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g022730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 273aa    MW: 30831.6 Da    PI: 9.0019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g022730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-184191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Csa13g022730.1 41 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 91
                    699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-134191IPR001471AP2/ERF domain
CDDcd000183.41E-3341101No hitNo description
SuperFamilySSF541711.96E-194299IPR016177DNA-binding domain
PROSITE profilePS5103219.8234299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2842100IPR001471AP2/ERF domain
SMARTSM003807.0E-3942105IPR001471AP2/ERF domain
PRINTSPR003674.6E-84354IPR001471AP2/ERF domain
PRINTSPR003674.6E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MHPYKYVFST STDRFIHKKK KMERQQPQKQ KAKEKSKGNK TKFVGVRQRP SGKWVAEIKD  60
TTQKIRMWLG TFETAEEAAR AYDEAACLLR GSNTRTNFAN HFPNNSQLSL KIRNLLHQKQ  120
SMKQQQQQQH KPVSSFAECN IDYTSAATSL TTTTTTTTVM PLNDVYRPES SVIGLPETNG  180
HQHPYSWPLV SGLNHLVPMA QGGEETHGHL NDHNSTDQHL GLAEIERQIS ASLYAMNGPS  240
SYYDSMNAEY AIFDPTDPIW DLPSLSQLFC PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14421081481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g022730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT29J130.0AF296838.1 Arabidopsis thaliana BAC T29J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454261.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-143RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLR0HAY21e-153R0HAY2_9BRAS; Uncharacterized protein
STRINGXP_010454261.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-130related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]