PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g022440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 247aa    MW: 27541.4 Da    PI: 4.8108
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g022440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.61.2e-176861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P +rikki+++de+v +i+  +P l+ska elf+ +l   ++  + +   +t+    ++++v   ++fdfl d+v +
  Csa13g022440.1  6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHAFNVFDFLRDTVGK 86
                    789**************************************************************************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-25272IPR009072Histone-fold
PfamPF008082.9E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.14E-181887IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDITLSRGAK  60
TVSSFHLKQC VHAFNVFDFL RDTVGKVPDL CGSDAEDQSA TKRRKLVDES NCNEEDMKNT  120
QVNEVKHSGS GRGKQGKGRG RGGGKTGSGL SLTFEEDGSP ESSRTPSPEN RDTSWKKVHS  180
NVRNFDLNVD LDENGDTATW LEKQLEESPE WPSLGMNEMK IDPDQQQQQQ QASASDEEDY  240
DEESIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-24271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g022440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454229.10.0PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBLA0A178UFV71e-122A0A178UFV7_ARATH; Uncharacterized protein
STRINGXP_010454229.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139682124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-113NF-YC family protein