PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g021670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 106aa MW: 11461.4 Da PI: 7.3717 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.1 | 1.2e-24 | 51 | 103 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y +ClkNh a++Gg ++DGCgEfm++ geegt++al C+ACgCHR+FH ++ Csa13g021670.1 51 VKYGKCLKNHMAHMGGRcSLDGCGEFMAA-GEEGTPEALSCSACGCHRSFHDKD 103 89**************7369********9.999******************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-14 | 51 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.6E-23 | 51 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.9E-22 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.582 | 53 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MESQKTIVGI FLPAERKELP RLSSVVAAVA MYVFIGNMLK RLEIDMSTAI VKYGKCLKNH 60 MAHMGGRCSL DGCGEFMAAG EEGTPEALSC SACGCHRSFH DKDYL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g021670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420655.1 | 6e-40 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Refseq | XP_010454130.1 | 5e-40 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
TrEMBL | A0A1J3ELS0 | 3e-20 | A0A1J3ELS0_NOCCA; Mini zinc finger protein 1 (Fragment) | ||||
STRING | XP_010420655.1 | 2e-39 | (Camelina sativa) | ||||
STRING | XP_010454130.1 | 2e-39 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17489 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 9e-21 | homeobox protein 21 |