PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g021480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 518aa    MW: 57066.1 Da    PI: 6.2841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g021480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-173684355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Csa13g021480.1 36 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 84
                    56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-343598IPR001471AP2/ERF domain
CDDcd000183.54E-293591No hitNo description
PROSITE profilePS5103220.6923592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-273691IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-203692IPR016177DNA-binding domain
PRINTSPR003674.7E-73647IPR001471AP2/ERF domain
PfamPF008476.6E-113884IPR001471AP2/ERF domain
PRINTSPR003674.7E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGFSLIHQNT STNTTTTTTT GERRGRRSKQ AEPGRFLGVR RRPWGRYAAE IRDPTTKERH  60
WLGTFDTAHE AALAYDRAAL SMRGTQARTN FVYTPTDVHT ILTNPNLHSL IVSPYNNNQS  120
FLPNSSPQFV IDHHPHYQNY HQPQQNKHTV AQTVSPAASF KTPVRHQSAD IQAFGNSPQN  180
SSSNGSLSSS LDEENNFFFS LTNEEHNHSN NNSGYLDCIV PNHCLKPPPE VTTTQNQAGA  240
SFTTLEASKA FESYGGFSNS YFEEAALSMR GTQARTNFVY TPTDVHTILT NPNLHSLIVS  300
PYNNNQSFLP NSSPQFVIDH HPHYQNYHQP QQNKHTVAQT VSPAASFKTP VRHQSADIQA  360
FGNSPQNSSS NGSLSSSLDE ENNFFFSLTN EEHNHSNNNS GYLDCIVPNH CLKPPPEATT  420
TQNQAGASFT TLEASKAFES YGGFSNSYFE EGEMMMLNHH EFGSCDLSAM ITNYGAAAAA  480
SMSLEDYAIT EPQDLSSSSL AAFGDVVADT TGFYSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-202491371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g021480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693280.0AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence.
GenBankAY5608730.0AY560873.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18560) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197357.21e-169Integrase-type DNA-binding superfamily protein
SwissprotQ6J9Q21e-170ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A178URC31e-168A0A178URC3_ARATH; PUCHI
STRINGAT5G18560.11e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-136ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]