PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g021450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 463aa    MW: 49069 Da    PI: 7.6458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g021450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.3e-115277227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +f rtG C yG+rC+F+H+p
  Csa13g021450.1 52 DEPDCIYFVRTGGCGYGSRCRFNHPP 77
                    6899********************97 PP
2zf-CCCH38.81.6e-12100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCk+G++Ck++H++
  Csa13g021450.1 100 GQPVCQHFMRTGTCKFGASCKYHHPR 125
                     5789********************96 PP
3zf-CCCH39.97.1e-13148172226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG+Ck+G++C+F+H+
  Csa13g021450.1 148 GEKECSYFMRTGQCKFGSTCRFHHP 172
                     7899********************9 PP
4zf-CCCH41.32.6e-13296321227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f+rtG Ck+G++C+F+H++
  Csa13g021450.1 296 EQPECQYFMRTGDCKFGSSCRFHHPM 321
                     5799********************95 PP
5zf-CCCH29.71.1e-09343365426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C +fa+ G Ck+G+ CkF H+
  Csa13g021450.1 343 AQCTHFAEHGVCKFGPACKFDHS 365
                     67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9485078IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-45077IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-95277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-65578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-55676IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27798126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-699125IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5103125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10148172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4152171IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798294322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10297321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5300321IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281339367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5343367IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7343365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MERYGGAGEE EPRSDPSLEW SAPGNETGIE ASMWRLGLQG GGDDGSLPER PDEPDCIYFV  60
RTGGCGYGSR CRFNHPPDRA PVLGGGLRTE AAGQFPERMG QPVCQHFMRT GTCKFGASCK  120
YHHPRQGGGR DSVIPISLNY MGFPLRPGEK ECSYFMRTGQ CKFGSTCRFH HPVPPGVHAP  180
SAGPTMYPSL QSQSVVPSSQ QYGVVLARPQ LLPGSYVPSP YGYGQMVLPP GMVPYSGWNP  240
YQASVSAMPS PGTQPSMGTS SVYGIRPLSP SAPAYQSGPS STGISNKEQT FPQRPEQPEC  300
QYFMRTGDCK FGSSCRFHHP MEAASPKDIT LSHIGLPLRP GAAQCTHFAE HGVCKFGPAC  360
KFDHSIGSSS LSYNPSASLL TDMPVVPHPL GSSSLGTLAP TSSLSLSEQR TELLSSSSIK  420
PITTRAGGTG TVPSSTTSAV SHPEPAETNK DNSASIEAKT SG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g021450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454104.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLR0HAE20.0R0HAE2_9BRAS; Uncharacterized protein
STRINGXP_010454104.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]