PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 289aa    MW: 33788.1 Da    PI: 9.8379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1619110196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ +  +p++f+++ + ++  s  ++l+ ++  sW++++  +++ +  y+ +kGW +F ++n+L  ++ ++F+++g+++f   v
  Csa13g020980.1  19 FFKILRKEDLSSEIMRGIPRNFIKSTS-EEDLSANIVLKVSWRSSWTIRI--SRNLCFyYMEKKGWDKFLSDNDLGNNEYLTFTHKGHMCF--SV 108
                     99*********************8874.456999****************..999999566669*********************999999..66 PP

                     EE CS
              B3  95 kv 96 
                      +
  Csa13g020980.1 109 DI 110
                     55 PP
2B344.72.4e-142042841599
                     -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      l +pkkf + h+ k  e+++ +++d e+  sW+v +++++++++ +  +GW + +k+ gL  gD+++Fkl++   +e++v+v r+
  Csa13g020980.1 204 FLGIPKKFEKLHMPK--ETTMFKIYDpERETSWDVMYKFTNNKQSRF-CAGWIRLAKDLGLVIGDVCTFKLVK--PTEMLVTVTRR 284
                     478*****8777644..5568999996777*********88888854.55********************976..77789998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-1713112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1714117IPR015300DNA-binding pseudobarrel domain
CDDcd100177.72E-1617111No hitNo description
PROSITE profilePS5086311.64619114IPR003340B3 DNA binding domain
PfamPF023621.5E-1419110IPR003340B3 DNA binding domain
SMARTSM010191.5E-1619114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16189284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464190285IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-19190284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-15191283No hitNo description
SMARTSM010192.4E-15193285IPR003340B3 DNA binding domain
PfamPF023623.4E-11204284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVRKRMFGQV MEKGDNPAFF KILRKEDLSS EIMRGIPRNF IKSTSEEDLS ANIVLKVSWR  60
SSWTIRISRN LCFYYMEKKG WDKFLSDNDL GNNEYLTFTH KGHMCFSVDI YQIDGMELLR  120
PRKSAPTVAF SSVRNKRDQR ENMFEYPSSE SSYLGPKTAE STGRRQTEKS KKKKMKVEII  180
CDDSEDDTLV PEFTITIKKS YLIFLGIPKK FEKLHMPKET TMFKIYDPER ETSWDVMYKF  240
TNNKQSRFCA GWIRLAKDLG LVIGDVCTFK LVKPTEMLVT VTRREINL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454030.10.0PREDICTED: B3 domain-containing protein At5g18090-like
SwissprotQ9FK611e-134Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLR0FLU31e-134R0FLU3_9BRAS; Uncharacterized protein
STRINGXP_010454030.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-127B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]