PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 309aa    MW: 35573.8 Da    PI: 10.3064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-1919111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ + ++p + +++++  k +s++++l+ ++g sW+vk+  +k++   y+  +GW++Fv++ngL e++ ++F+++ +++f  +v
  Csa13g020860.1  19 FFKILRREDFSSELMRMIPHHLIRSISD-KSSSFKMVLKVPWGSSWQVKI--SKNPFFhYMEDRGWNQFVNDNGLGENEYLTFTHEANMCF--NV 108
                     99***9******9999**********64.5799*****************..99999867777**********************999***..77 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  Csa13g020860.1 109 NIY 111
                     766 PP
2B353.54.4e-172293061597
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +pkkf++ h+ +  e+k  ++ +++g +sWev++    ++ +  +++GW++F+k+ gL++gD+++Fkl++   +e++vkv 
  Csa13g020860.1 229 FLGIPKKFVDMHMPN--ETKVFKIHHPRGkKSWEVTY--FVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIK--PTEMCVKVS 306
                     368*********866..56689999999989******..4444455699*********************987..666788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1915115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1915118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-1717111No hitNo description
PROSITE profilePS5086312.8319114IPR003340B3 DNA binding domain
PfamPF023622.4E-1719112IPR003340B3 DNA binding domain
SMARTSM010199.1E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661215308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-20215306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20215305IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-16216307No hitNo description
SMARTSM010198.7E-18218308IPR003340B3 DNA binding domain
PfamPF023623.8E-13229305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRNRVFGQV MGEVDNPAFF KILRREDFSS ELMRMIPHHL IRSISDKSSS FKMVLKVPWG  60
SSWQVKISKN PFFHYMEDRG WNQFVNDNGL GENEYLTFTH EANMCFNVNI YEANGKEMLR  120
PRQSSTVTSS SGRNKREERK SICIDVKKEV ETESCSESGH PVLKTAESTS GRSKQKQELN  180
LRKRETKETT KSKKRKNRKV DTVSNDSEAG TSSLVPEFKI TIKKSHLLFL GIPKKFVDMH  240
MPNETKVFKI HHPRGKKSWE VTYFVTDVQS RFSAGWSRFA KELGLEVGDV CTFKLIKPTE  300
MCVKVSKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181195RKRETKETTKSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454021.10.0PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-174Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLR0FIQ90.0R0FIQ9_9BRAS; Uncharacterized protein
STRINGXP_010454021.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-173VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]