PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g020630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 261aa MW: 28778.9 Da PI: 6.7045 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47 | 4.4e-15 | 18 | 78 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Csa13g020630.1 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 78 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.5 | 1.7e-34 | 17 | 80 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Csa13g020630.1 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 80 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-14 | 12 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 13 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.224 | 14 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-5 | 16 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.8E-13 | 18 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MDQEGASQST STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGAV 60 GDANVFYWFQ NRRSRSRRRQ RQLQAATAAP ATSGGDQHMT AMSMHQYPYS NSEIDLGFGS 120 CINSSANYFL NGTTSSSQVS SFLLGLSSSS GVCETNGMEN LFTMHGHESH HHHQHSSNAH 180 SMFSSSDENS NFQYQQGLMT VFINGVPTEV TKGTIDMKAT FGEDSVLLHS SGLPLPTDEF 240 GFLMHSLQHG QAYFLVPRQT * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g020630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY251403 | 0.0 | AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453983.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 1e-129 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | D7LXM9 | 1e-138 | D7LXM9_ARALL; Predicted protein | ||||
STRING | XP_010453983.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-114 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|