PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g019380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 352aa    MW: 39649.9 Da    PI: 5.2811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g019380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
   Csa13g019380.1 14 KGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding49.21.2e-1571111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
   Csa13g019380.1  71 SEYEEQMVIDLHAQLGNR-WSKIASQLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-19563IPR009057Homeodomain-like
PROSITE profilePS5129412.261961IPR017930Myb domain
SuperFamilySSF466893.44E-2611108IPR009057Homeodomain-like
SMARTSM007172.1E-91363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001673.93E-71661No hitNo description
PROSITE profilePS5129425.84262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2464117IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PfamPF002492.2E-1371111IPR001005SANT/Myb domain
CDDcd001672.87E-1074112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTIE EDKKLINFIL TNGHCCWRAL PKLSGLLRCG KSCRLRWINY  60
LRPDLKRGLL SEYEEQMVID LHAQLGNRWS KIASQLPGRT DNEIKNHWNT HIKKKLKKLG  120
IDPLTHKPLS EQEASQQAQG RKKSLVLHDD KSPKQDQEDK QTKKDKQDQH HTEQDLEKNI  180
TSASSDGFCI DEVPLLSPHE ILIDITSSQQ HHTNDDNVNI NTSKFTSPSS SSSSTSSCVS  240
SVVPGDEFSK FLDEMEINLD LKWLSSDDSS GENISKDGKF NNTVDTMDXG EISKDGKFNN  300
TVDTMDLWDI NDLNSLDIFL NDDDHDGAFV GNGNGCSRMV LDQDSWTFDL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g019380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759900.0AF175990.1 Arabidopsis thaliana putative transcription factor (MYB43) mRNA, complete cds.
GenBankAY5196250.0AY519625.1 Arabidopsis thaliana MYB transcription factor (At5g16600) mRNA, complete cds.
GenBankBT0027620.0BT002762.1 Arabidopsis thaliana clone C105246 unknown protein (At5g16600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453823.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U72e-88MYB20_ARATH; Transcription factor MYB20
TrEMBLR0GVX60.0R0GVX6_9BRAS; Uncharacterized protein
STRINGXP_010453823.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-169myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]