PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g018910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 449aa    MW: 50616.4 Da    PI: 4.4664
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g018910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.82.8e-25351400251
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     +k+++++d s++F+lpi++AA+e++vc+Tv+K+iCR+ G++RWPhRkiks
  Csa13g018910.1 351 TKKMTVKDFSEHFHLPIEAAANEMKVCPTVMKKICREGGLMRWPHRKIKS 400
                     799**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.995341421IPR003035RWP-RK domain
PfamPF020425.6E-22353400IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAGDDDDPKP SALERNNADE EDPYINDPLD EFKGFTDEDI QNVMADFNPT LMDISFTENT  60
HPPSMSLPLP TDVDQTQLMH ELDLSITDYD INDEFDGMSS FLDDDYTISW DMFEPLNDDP  120
NGNINNDVPQ ETRNVVETTR LEVSIRVFGD ANGPNFETGG PSTVHVPRIA DRMFVVPDEN  180
SVCPCCTMLR ELVHVKEREI RNTLIIFGGI GFLCHALLLT QLLASDPMEP PPQPQPQPLR  240
YYLHDLTMEE VKNIIEDYCS ERVASGLTLR QDTNAAFYQA MSVNSIVNQP PEPMLTLPST  300
DVPLPLVSPD EALDVRPVPL RVGLREQATT DVSKERKKGK QTPLAAQRAR TKKMTVKDFS  360
EHFHLPIEAA ANEMKVCPTV MKKICREGGL MRWPHRKIKS RLTKIETLKK ILLSTAKEGE  420
EKARIEAEIE RLQRDIERIC SDALKNAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g018910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453763.10.0PREDICTED: uncharacterized protein LOC104735633
TrEMBLA0A178UGY41e-173A0A178UGY4_ARATH; Uncharacterized protein
STRINGXP_010453763.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.11e-10Nin-like family protein