PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g018660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 356aa    MW: 39352.8 Da    PI: 6.5645
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g018660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box36.21.3e-115297342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     r+C+ +e+ ++ +fC+ +   lC  C +e+H+       H++vp+
  Csa13g018660.1 52 VRVCQSCERAPAAFFCKADAASLCTACDSEIHSAnplarrHQRVPI 97
                    689*****************************66899999**9997 PP
2CCT64.53.1e-22286330145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R+a+++RY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  Csa13g018660.1 286 RQARVMRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKRKE 330
                     99****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-8754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58754IPR000315B-box-type zinc finger
CDDcd000217.94E-71154No hitNo description
PROSITE profilePS5011912.0025097IPR000315B-box-type zinc finger
PfamPF006433.7E-95297IPR000315B-box-type zinc finger
CDDcd000212.48E-95397No hitNo description
SMARTSM003362.7E-125597IPR000315B-box-type zinc finger
PfamPF062031.4E-16286328IPR010402CCT domain
PROSITE profilePS5101716.549286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLKEESNWAQ VCDSCRSAAC TVYCHADSAY LCTSCDAQVH AVNRLASRHG RVRVCQSCER  60
APAAFFCKAD AASLCTACDS EIHSANPLAR RHQRVPILPI SGNSYGSMET NHSCETTVTD  120
PENSMVVVGQ EEEDRDEAEA ASWLLPNLGK NSGNNNNSQN NGFSIGDEYL DLVDYSSSMD  180
QSSQYQQHRN VPERSYRGDG VVPLQVDESK SHKHHEELNF ELGITYAPPS SSNGLISHMV  240
HVSSIDLGVV PESTTSDSTV SHPISPKAVT DQIPEPPAQM LSPIERQARV MRYREKKKMR  300
KFEKTIRYAS RKAYAEKRPR IKGRFAKRKE VDAEADQAFS TTLTFDTGYG IVPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293299REKKKMR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g018660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0650011e-167AY065001.1 Arabidopsis thaliana AT5g15850/F14F8_230 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090600.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 1-like
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLR0HBC40.0R0HBC4_9BRAS; Uncharacterized protein
STRINGXP_010453736.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-160CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]