PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g018040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 266aa    MW: 28788.4 Da    PI: 8.9056
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g018040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.75.2e-3255110458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     ++YkeClkNhAa++Ggha+DGCgEfmps+  + +++++l+CaACgCHRnFHRre +
  Csa13g018040.1  55 TTYKECLKNHAARIGGHALDGCGEFMPSPAFNsNDPTTLTCAACGCHRNFHRREDD 110
                     78***************************999889******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2647108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-2755109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-3156108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6857108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.62E-19166238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27170237IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-24180236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDVIATTTTI VSDLDSRQPE IEAPVRIQPA KPISFSNGKR CHHNHLASEA AAVATTYKEC  60
LKNHAARIGG HALDGCGEFM PSPAFNSNDP TTLTCAACGC HRNFHRREDD PLSASAVVPA  120
IEFRPHNRHQ LPPPLPPHPV GIRSPDDDDS ASPPPISSSY MLLALSGGGG GANTAGLRSR  180
KRFRTKFSQY QKEKMFEFAE RVGWRMPRAD DVAVKEFCRE IGVDKSVFKV WMHNNKISGR  240
GGAKRANGGD SRESVVPTNG SFSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221792391676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g018040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankBT0121950.0BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453650.10.0PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-161ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A178UMR31e-159A0A178UMR3_ARATH; ZHD8
STRINGXP_010453650.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-135homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]