PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g017960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 554aa MW: 59683.1 Da PI: 7.2099

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g017960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	6.8e-30	232	291	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ Csa13g017960.1 232 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 291 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-31	217	293	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	225	293	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	227	293	IPR003657	WRKY domain
SMART	SM00774	9.3E-37	232	292	IPR003657	WRKY domain
Pfam	PF03106	4.6E-27	233	291	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MEVLLKLPAS DSPLKDKVFG SVKVNILTIY GVGDHQELES AKAEMSEVKE ENEKLKGMLE 60 RIESDYKTLK LRFFDIIQQE PSDNPAQNQN HPKPTTTDLS SFDQERELVS LSLGRRSSSP 120 SDSIPKKEEK DAKSAEFNAD KELTKAGLTL GINNIDGRES NVSLSMENTA NSSLENSTEE 180 APGETWPPSK VTGKRSSPAP ASGGDVEGET GQQNHVKRAR VCIRARCDTP TMNDGCQWRK 240 YGQKIAKGNP CPRAYYRCTV APGCPVRKQV QRCADDMSIL ITTYEGTHSH PLPLSATTMA 300 STTSAAASML LSGSSSSPAA EMIGNNLYDN SRFNNCSNKS FYSPTLHSPL HPTVTLDLTA 360 PQHPSSSSLP SLNFNKFSNS FQRFPSTSLN FSSNASSSST SSNLNLPAIW GNGYSSYTPY 420 PYNNVQFGPS NLGKTVQNSQ SLTETLTKAL TSDPSFHSVI AAAISTMVGS NGEQQIAGPR 480 NSIGNNIQQT TTTNNNKGCG GYFSSLLMSN IMASNQTGAS LDQPSSQLPP FSMFKNSSSS 540 SSTTSFVNKE EKS*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MEVLLKLPAS DSPLKDKVFG SVKVNILTIY GVGDHQELES AKAEMSEVKE ENEKLKGMLE  60
RIESDYKTLK LRFFDIIQQE PSDNPAQNQN HPKPTTTDLS SFDQERELVS LSLGRRSSSP  120
SDSIPKKEEK DAKSAEFNAD KELTKAGLTL GINNIDGRES NVSLSMENTA NSSLENSTEE  180
APGETWPPSK VTGKRSSPAP ASGGDVEGET GQQNHVKRAR VCIRARCDTP TMNDGCQWRK  240
YGQKIAKGNP CPRAYYRCTV APGCPVRKQV QRCADDMSIL ITTYEGTHSH PLPLSATTMA  300
STTSAAASML LSGSSSSPAA EMIGNNLYDN SRFNNCSNKS FYSPTLHSPL HPTVTLDLTA  360
PQHPSSSSLP SLNFNKFSNS FQRFPSTSLN FSSNASSSST SSNLNLPAIW GNGYSSYTPY  420
PYNNVQFGPS NLGKTVQNSQ SLTETLTKAL TSDPSFHSVI AAAISTMVGS NGEQQIAGPR  480
NSIGNNIQQT TTTNNNKGCG GYFSSLLMSN IMASNQTGAS LDQPSSQLPP FSMFKNSSSS  540
SSTTSFVNKE EKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	219	293	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g017960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL353993	0.0	AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453641.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	R0H9M0	0.0	R0H9M0_9BRAS; Uncharacterized protein
STRING	XP_010453641.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72