PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 113aa    MW: 12597.1 Da    PI: 4.5563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-161691789
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                    ++p ++ e+   + + +kt +l+ + g+ W+v +  +  +g++++++GW +Fv +n+Lk+g+f++F +dg + 
  Csa13g017640.1  1 MIPTSYYEHL--PRRLPKTAILMGTGGKIWKVAM--KSIRGQVYFEQGWPSFVADNELKDGEFLTFVFDGYNH 69
                    5888888444..456899****************..99999*************************9887443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.621178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-19180IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-8178IPR003340B3 DNA binding domain
CDDcd100171.89E-17175No hitNo description
Gene3DG3DSA:2.40.330.101.4E-17279IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-13266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MIPTSYYEHL PRRLPKTAIL MGTGGKIWKV AMKSIRGQVY FEQGWPSFVA DNELKDGEFL  60
TFVFDGYNHY EVSIYGHGGC KEIRAVVEVE DISDESESDN NSGESLVSVT QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1528026104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090337.12e-79PREDICTED: B3 domain-containing protein At3g06220-like
SwissprotQ1PES73e-58Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D42e-64R0H1D4_9BRAS; Uncharacterized protein
STRINGXP_010492301.13e-74(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-48B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]