PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g017310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39322.2 Da PI: 6.6778 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.2 | 7e-32 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a.....t 78 lp+G++F+Ptdee + e+L++k+ + + v ++v+i++++P++Lp v+++ ++++fF k++++y++g+rk+r + t Csa13g017310.1 55 LPKGVKFEPTDEEAI-EHLEAKCGIDGlkphlliQ---DfirsVTQDVGINYTHPQNLP-GVNKDGTSVFFFNKTAHAYQNGQRKRRrVtptnlT 144 799************.99****8777755665542...13343689999**********.6778899*******************954565552 PP NAM 79 k.sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + s +W++tg++k+v+ +g ++g+kk++v+yk + k+ek++Wv+h+y+l Csa13g017310.1 145 DeSVRWHKTGQTKPVII-NGVQKGCKKIMVLYKSarKGLKPEKSNWVLHQYHL 196 25889************.999***********6422556778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-35 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.841 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-12 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MERAWIVDGP WIARNIKNAP VSSALHIKEC GASINCPNCS YSVDNSNVLA PWPGLPKGVK 60 FEPTDEEAIE HLEAKCGIDG LKPHLLIQDF IRSVTQDVGI NYTHPQNLPG VNKDGTSVFF 120 FNKTAHAYQN GQRKRRRVTP TNLTDESVRW HKTGQTKPVI INGVQKGCKK IMVLYKSARK 180 GLKPEKSNWV LHQYHLGTEE GEIGEFVVSK ITYQQQKQTE KTIVESEGSE VRGGPSTPKT 240 TTPTQARPVI SVDEDKITYE SFAERLEDIQ EASFGSTSDK RAQVAGNNVS VTDDNLVSKK 300 IEASSSLVTK SPNHHGNVDI GSGNFSVSEL ENAELGTLPD LLSLASADSL LNWLELF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 136 | RKRRR |
2 | 133 | 137 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g017310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163792 | 1e-159 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). | |||
GenBank | AL163817 | 1e-159 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 1e-159 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424091.2 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 7e-73 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A178UA43 | 0.0 | A0A178UA43_ARATH; NAC085 | ||||
TrEMBL | A0A1P8BAI4 | 0.0 | A0A1P8BAI4_ARATH; NAC domain containing protein 85 | ||||
STRING | XP_010453573.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 0.0 | NAC domain containing protein 85 |