PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 272aa    MW: 31207.1 Da    PI: 5.7683
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-111461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R +k+c++rw +yl
   Csa13g017160.1 14 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRWGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding46.31e-1467118146
                      TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 
                      rg +T  E++++ +++ qlG++        W++Ia+++  gRt++++k++w++
   Csa13g017160.1  67 RGGFTDAEEDRIMELHSQLGNRydnmnifLWSKIASHFS-GRTDNEIKNHWNT 118
                      788************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-19564IPR009057Homeodomain-like
PROSITE profilePS5129412.433961IPR017930Myb domain
SuperFamilySSF466891.98E-2311116IPR009057Homeodomain-like
SMARTSM007170.00161363IPR001005SANT/Myb domain
PfamPF002491.7E-91461IPR001005SANT/Myb domain
PROSITE profilePS5129419.0362124IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2265125IPR009057Homeodomain-like
SMARTSM007173.6E-1066122IPR001005SANT/Myb domain
PfamPF002492.6E-1267118IPR001005SANT/Myb domain
CDDcd001675.07E-770118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRIV PKLAGLLRWG KSCRLRWINY  60
LRPDLKRGGF TDAEEDRIME LHSQLGNRYD NMNIFLWSKI ASHFSGRTDN EIKNHWNTKI  120
KKKMKHLGLD PATHKPIDNT THHTDPNQDT KPKMCSSTNE GEEINDQTPK DDVITETTKA  180
LILSGSDEEL LAKNCKTLGV EEIDLESLFE PQGNEITSSS LSSLYSNISR SESSSHFAED  240
SISLDQWDLD MTDPFVPWDH FANFDDNLFF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121245108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638171e-174AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAY5196221e-174AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds.
GenBankCP0026881e-174CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453553.11e-179PREDICTED: myb-related protein 315
SwissprotQ9C7U72e-65MYB20_ARATH; Transcription factor MYB20
TrEMBLF4K6R61e-155F4K6R6_ARATH; Myb domain protein 40
STRINGXP_010453553.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-157myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]