PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g016640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23444.7 Da PI: 5.0059 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g Csa13g016640.1 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67 678******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.45E-31 | 17 | 74 | No hit | No description |
SMART | SM00380 | 7.1E-34 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-21 | 19 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-12 | 19 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-29 | 19 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNTTSAKSKK KQEEAGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR 60 AARSMRGTRA RTNFVYSDMP PSSSVTSIVS PDDPPPPPPA PAPPNDDPVD YMMMFNQYSS 120 TDSPMLQPHC DQVDSYMFGG SHSSTSYCYS NDSSNELPPL PSDLSNSCYS QPQWTWSGDD 180 YSAEYVHSPM FSRMPPVSDS LPQGFNHFGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 16 | 74 | 3 | 62 | ATERF1 |
3gcc_A | 2e-19 | 16 | 74 | 3 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 11 | AKSKKKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g016640.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005230 | 0.0 | AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12. | |||
GenBank | AY560852 | 0.0 | AY560852.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13910) mRNA, complete cds. | |||
GenBank | BT024919 | 0.0 | BT024919.1 Arabidopsis thaliana At5g13910 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453495.1 | 1e-154 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
Swissprot | Q9M644 | 1e-131 | LEP_ARATH; Ethylene-responsive transcription factor LEP | ||||
TrEMBL | R0HAG6 | 1e-132 | R0HAG6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010453495.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-100 | ERF family protein |
Publications ? help Back to Top | |||
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