PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g015190.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 314aa MW: 33158.4 Da PI: 8.5699

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g015190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.9	3.8e-66	101	266	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalsstklss 93 +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + a+ +a +s +++ +k++r ++++q+a+s+t++s+ Csa13g015190.1 101 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPSGANPTAGSSLsTSSGTKKPRIVgsQQQQQQATSHTSTSN 195 57999**********************************************999999888887757788899998854455555566666555 PP DUF702 94 aeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +++++etss +P +++++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle Csa13g015190.1 196 T-PPQSFETSSsrqdergsreaWPGQIRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 266 4.667888887899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-59	104	265	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	106	148	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-30	216	264	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGMVGLRDVF LVAPAYHHHQ NAGVISGPEA APLGVGVVPL LTAGPPQQNV EDTDINFLGN 60 NRRWQNNNNN NHETQYLQFK STNQTAVGTS SNNNSGSGSG ASGTATCQDC GNQAKKECKQ 120 RRCRTCCKSR GFDCSTHVKS TWVSAARRRE RQVMPSGANP TAGSSLSTSS GTKKPRIVGS 180 QQQQQQATSH TSTSNTPPQS FETSSSRQDE RGSREAWPGQ IRAPAVFKCV RVTAVEDGDD 240 EYAYQAVVKI GGHVFKGFLY DQGLEPKEGF PNMSDLHLGG AANNHNGVSA SAPILEPPNV 300 YGGGGGSGGG FYG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g015190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT020614	0.0	BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453299.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-163	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	R0HF13	1e-180	R0HF13_9BRAS; Uncharacterized protein
STRING	XP_010453299.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-151	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]