PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g014060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 366aa MW: 40565.9 Da PI: 4.4564

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g014060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.7	4.6e-09	303	350	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +k +e+Le+++++++ p+ + + + ++L+ ++V WF rRa Csa13g014060.1 303 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDRRA 350 567899*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.993	295	355	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-8	300	355	IPR009057	Homeodomain-like
SMART	SM00389	4.0E-4	301	359	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-6	303	351	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-8	303	361	IPR009057	Homeodomain-like
CDD	cd00086	5.39E-6	306	350	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIKAMAVALS SSSGVVSHLL PPSFSSSSGV SVNRVLFRNR KSSPCSLALP FHSPSPRSVL 60 VFARGKNRKG FASSSSPSPK KNKKKSFERD DNGGSEEEDD PFEALFNLLE EDLKNDNSSI 120 DDEEISEEEL NALADELARV LGGGDDDDDG IDLFGSATAD VVDDKDEDED DNIDDDDDED 180 ENDDDSEEED ERPTKLKNWQ LRRLAYALKA GRRKTSIKNL AAEVCLDRAY VLELLRDPPP 240 KLLMLSATLP DEKPPVAAPE NSSPDPTPEE SSPAEEDVVV EPVEKVKDEA VHVMQQRWSA 300 QKRVKKAHIE TLEKVYRRSK RPTNAVVSSI VQVTNLPRKR VLKWFEDRRA EDGVPDKRAP 360 YQAPV*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIKAMAVALS SSSGVVSHLL PPSFSSSSGV SVNRVLFRNR KSSPCSLALP FHSPSPRSVL  60
VFARGKNRKG FASSSSPSPK KNKKKSFERD DNGGSEEEDD PFEALFNLLE EDLKNDNSSI  120
DDEEISEEEL NALADELARV LGGGDDDDDG IDLFGSATAD VVDDKDEDED DNIDDDDDED  180
ENDDDSEEED ERPTKLKNWQ LRRLAYALKA GRRKTSIKNL AAEVCLDRAY VLELLRDPPP  240
KLLMLSATLP DEKPPVAAPE NSSPDPTPEE SSPAEEDVVV EPVEKVKDEA VHVMQQRWSA  300
QKRVKKAHIE TLEKVYRRSK RPTNAVVSSI VQVTNLPRKR VLKWFEDRRA EDGVPDKRAP  360
YQAPV*

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g014060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002017	0.0	BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds.
GenBank	BT008743	0.0	BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453172.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	1e-160	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	D7M3N9	1e-171	D7M3N9_ARALL; Uncharacterized protein
STRING	XP_010453172.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12077	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	2e-88	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]