PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g011010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44486.6 Da PI: 4.5949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.9 | 6e-47 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtd elv +yLk+k+ gkkl + ++i+evdiyk+eP dLp + +k+++ +w+fF++r+kkya+g r+nrat+ gyWk+tgk+++vl Csa13g011010.1 6 LAPGFRFHPTDVELVRYYLKRKILGKKLIV-DAIAEVDIYKFEPPDLPdMsYIKGGDLKWHFFCPREKKYASGVRANRATDCGYWKTTGKERPVL 99 579************************988.89**************96347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++e+vg ktL+++ g++p+ge+tdWvmheyrle Csa13g011010.1 100 C-NSEVVGKIKTLIYHFGKSPRGERTDWVMHEYRLE 134 *.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.563 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MGKTKLAPGF RFHPTDVELV RYYLKRKILG KKLIVDAIAE VDIYKFEPPD LPDMSYIKGG 60 DLKWHFFCPR EKKYASGVRA NRATDCGYWK TTGKERPVLC NSEVVGKIKT LIYHFGKSPR 120 GERTDWVMHE YRLEDKALAQ MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FRDEDWSDEE 180 ERTDVPTTSN PTIFHEPSRE TSLAVTVADD LNKDCFGGMI SESCVSDFLP TTTNTTSKLP 240 DPSDAANTHM SVTPLADTLP TPNNNNDDLY AMLDLFDDDE EFLGFPNEAI HNPGVSAPVS 300 LEDIFNGLPD LGNMHNNMPR ASSYDLIENS ELYLELQDLT APLLPPPLTA PLNPQTGNVN 360 DSRSSYLYNQ GHFDFSGGND DGPYGFSANI GHGPDSEKR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 6 | 156 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g011010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK317217 | 0.0 | AK317217.1 Arabidopsis thaliana AT5G09330 mRNA, complete cds, clone: RAFL22-35-P15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452910.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Refseq | XP_010452911.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 0.0 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | R0HAY9 | 0.0 | R0HAY9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010452909.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09330.4 | 0.0 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
---|---|---|---|
|