PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g010140.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 539aa MW: 59590.4 Da PI: 8.4661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 9.8e-18 | 283 | 332 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Csa13g010140.2 283 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 332 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 281 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.225 | 281 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-19 | 282 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-14 | 283 | 334 | No hit | No description |
Pfam | PF00010 | 3.3E-15 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 287 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPPS SQGSHLKTHD FLQPLECVGG 60 KEVISRINTP TTASEKPPPP APPPPLQHVL PGGIGTYTIS RIPYFHHHHQ RVPKPESSPP 120 MMFTTAAQAS GGGNERNRIL DENSNSNCSS YAAAASGFTL WDESASVKKG QTRKENNVGE 180 RANMRATVGQ WPVVERRSQS LTNNHMSGFS SRSSSQGSGL KSQSFMDMIR SAKGSSQEDD 240 LDDEDDFLMK KESSSTSQSH RVDLRVKADV RGSGNDQKLS TPRSKHSATE QRRRSKINDR 300 FQMLRQLIPN SDQKRDKASF LLEVIEYIQF LQEKADKYET SYQGWNHEPA KLLNWQRNIQ 360 QLVPEGTVAF APKLEEEKNN IPVPVLATAQ GVAIDHPTSA TTFPLSIQSN NFFSPVIAGN 420 PVPQFHTRVA SSEAVEPTPS SRSQTQPLKE EEEVEDEEIL EGNISISSVY SQGLVKTLRE 480 ALENSGVDLT KASISVEIEL AKQSASSFKD HEARGPVSRT RNEDVKQTRK PKRLKTGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g010140.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353313 | 0.0 | AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019090707.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X3 | ||||
Swissprot | Q9LEZ3 | 0.0 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | R0FDU1 | 0.0 | R0FDU1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010452786.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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