PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g010140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 609aa MW: 67368.3 Da PI: 8.0784

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g010140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.3	1.2e-17	287	336	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Csa13g010140.1 287 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 336 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.225	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-23	285	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-19	286	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.49E-14	287	338	No hit	No description
Pfam	PF00010	3.8E-15	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	291	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPPS SQGSHLKTHD FLQPLECVGG 60 KEVISRINTP TTASEKPPPP APPPPLQHVL PGGIGTYTIS RIPYFHHHHQ RVPKPESSPP 120 MMFTTAAQAS GGGNERNRIL DENSNSNCSS YAAAASGFTL WDESASVKKG QTRKENNVGE 180 RANMRADVAA TVGQWPVVER RSQSLTNNHM SGFSSRSSSQ GSGLKSQSFM DMIRSAKGSS 240 QEDDLDDEDD FLMKKESSST SQSHRVDLRV KADVRGSGND QKLSTPRSKH SATEQRRRSK 300 INDRFQMLRQ LIPNSDQKRD KASFLLEVIE YIQFLQEKAD KYETSYQGWN HEPAKLLNWQ 360 RNIQQLVPEG TVAFAPKLEE EKNNIPVPVL ATAQGVAIDH PTSATTFPLS IQSNNFFSPV 420 IAGNPVPQFH TRVASSEAVE PTPSSRSQTQ PLKEEEEVED EEILEGNISI SSVYSQGLVK 480 TLREALENSG VDLTKASISV EIELAKQSAS SFKDHEARGP VSRTRNEDVF LPLCFLITFM 540 WSRLVKTLRE ALENSGVDLT KASISVEIEL AKQSASSFKD HEARGPVSRT RNEDVKQTRK 600 PKRLKTGP*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPPS SQGSHLKTHD FLQPLECVGG  60
KEVISRINTP TTASEKPPPP APPPPLQHVL PGGIGTYTIS RIPYFHHHHQ RVPKPESSPP  120
MMFTTAAQAS GGGNERNRIL DENSNSNCSS YAAAASGFTL WDESASVKKG QTRKENNVGE  180
RANMRADVAA TVGQWPVVER RSQSLTNNHM SGFSSRSSSQ GSGLKSQSFM DMIRSAKGSS  240
QEDDLDDEDD FLMKKESSST SQSHRVDLRV KADVRGSGND QKLSTPRSKH SATEQRRRSK  300
INDRFQMLRQ LIPNSDQKRD KASFLLEVIE YIQFLQEKAD KYETSYQGWN HEPAKLLNWQ  360
RNIQQLVPEG TVAFAPKLEE EKNNIPVPVL ATAQGVAIDH PTSATTFPLS IQSNNFFSPV  420
IAGNPVPQFH TRVASSEAVE PTPSSRSQTQ PLKEEEEVED EEILEGNISI SSVYSQGLVK  480
TLREALENSG VDLTKASISV EIELAKQSAS SFKDHEARGP VSRTRNEDVF LPLCFLITFM  540
WSRLVKTLRE ALENSGVDLT KASISVEIEL AKQSASSFKD HEARGPVSRT RNEDVKQTRK  600
PKRLKTGP*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g010140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	0.0	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019090705.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	R0FDU1	0.0	R0FDU1_9BRAS; Uncharacterized protein
STRING	XP_010452786.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]