PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g009080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 627aa    MW: 70746.6 Da    PI: 8.1296
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g009080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.92e-176861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t+    ++++v+r ++fdfl ++v +
  Csa13g009080.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86
                    5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-25372IPR009072Histone-fold
SuperFamilySSF471134.37E-19499IPR009072Histone-fold
PfamPF008081.3E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE profilePS5010311.995385412IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026385411IPR000571Zinc finger, CCCH-type
SuperFamilySSF549283.53E-21441533IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3304.7E-18442542IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd122242.02E-34455528No hitNo description
PROSITE profilePS5010216.671456529IPR000504RNA recognition motif domain
SMARTSM003609.1E-14457525IPR000504RNA recognition motif domain
PfamPF000761.6E-12461522IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK  60
TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGHSQGH ADVAMDDRSI SKRRKPPGDE  120
INDSDEELKK TKVHEMGHAG TSGRGRGRGR GRGRGRGAKT SERELFHHRE MEIDPTILVA  180
PPFTQDEMKM HAPPQQHDSE KKDVDERSYQ TKQQLQSPEE GNNDTNSGLG RGFDLNTQSL  240
DVEIKLPVIT ASRETKREEY PCWSIPNMGN IDPVQLANMS KRWQPGRNAR FKKTEICQTC  300
CKLKHVCQVC LLDLDYSLPV LVRDTALNIS THDSIPKSDV NREYFAEDHD QKTRAGMDYE  360
SSSFGKMPPN DTISKLQRTT PFYKKNRPHV CSFYTIGECN RGAGCAFRHE MPKTGELSHQ  420
NIKDRYYGVN DPVAMKLLGK AGEMSTLKPP EDESIKTLYN GGLNSSILEQ DIHNQFYAYG  480
EIESIRVLAE KGYAFVTYTT REGAEKAIQE LSNRLVVNGQ RLKLTWGRPK MPKPDQSGSY  540
QQQQGTVAVI SQQQNQPPPP MQQYYMHTPT PNQYRPYYPS MDPQRMGAAT PTQEDRGSSN  600
SEINNGDSSS SYLTICHCPS DMKLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_P3e-8328252856304Pre-mRNA-splicing factor RBM22
5xjc_O3e-8328252856304Pre-mRNA-splicing factor RBM22
5yzg_O3e-8328252856304Pre-mRNA-splicing factor RBM22
5z56_O3e-8328252856304Pre-mRNA-splicing factor RBM22
5z57_O3e-8328252856304Pre-mRNA-splicing factor RBM22
6ff4_P3e-8328252856304Pre-mRNA-splicing factor RBM22
6ff7_P3e-8328252856304Pre-mRNA-splicing factor RBM22
6icz_O3e-8328252856304Pre-mRNA-splicing factor RBM22
6id0_O3e-8328252856304Pre-mRNA-splicing factor RBM22
6id1_O3e-8328252856304Pre-mRNA-splicing factor RBM22
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145155RGRGRGRGRGR
2147156RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g009080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456427.10.0PREDICTED: zinc finger CCCH domain-containing protein 4-like
SwissprotQ9LNV50.0C3H4_ARATH; Zinc finger CCCH domain-containing protein 4
TrEMBLA0A087HLR20.0A0A087HLR2_ARAAL; Uncharacterized protein
STRINGXP_010456427.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-98nuclear factor Y, subunit C11