PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37568.1 Da    PI: 8.2783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-18188242256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Csa13g008730.1 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 242
                     678899***********************************************98 PP
2HD-ZIP_I/II128.43e-41188277191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Csa13g008730.1 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-TL 277
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17167242IPR009057Homeodomain-like
SuperFamilySSF466894.14E-18180245IPR009057Homeodomain-like
PROSITE profilePS5007116.989184244IPR001356Homeobox domain
SMARTSM003891.5E-16186248IPR001356Homeobox domain
CDDcd000861.55E-15188245No hitNo description
PfamPF000462.3E-15188242IPR001356Homeobox domain
PROSITE patternPS000270219242IPR017970Homeobox, conserved site
PfamPF021837.0E-11244277IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.2E-26244287IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELALSLGDN TKKQFSFLEK HSKINNPSAS STSTSDKDLG FCMGLDVAFA GHRSLSSSSS  60
PSVEDVKKKP APRTNNLDGF RVSSSVDPPL QLQLHFPNWL PENGRQEGRI LSGVATMVTE  120
EEDEVEEAVP SMSVSPPNSV TSSFQLDFGI KSYGYERRNN KRDIDDEVER SASRASNEDN  180
DDENGSTRKK LRLSKDQSAF LEDSFKEHST LNPKQKIALA KQLNLRPRQV EVWFQNRRAR  240
TKLKQTEVDC EYLKRCCESL TEENRRLQKE VKELRTLKTS TPFYMQLPAT TLTMCPSCER  300
VATSATQPVT SASQNLGLAT SSLHCPVKPR SAKQVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192TRKKLRL
2236244RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g008730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311820.0AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene).
GenBankAK2274230.0AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452611.10.0PREDICTED: homeobox-leucine zipper protein HAT14
SwissprotP466650.0HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLR0FFM30.0R0FFM3_9BRAS; Uncharacterized protein
STRINGXP_010452611.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.10.0homeobox from Arabidopsis thaliana