PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g008530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YA

Protein Properties

Length: 303aa MW: 33864.1 Da PI: 9.2373

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g008530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	88.5	9.2e-28	170	222	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVNaKQy++I++RR +Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF Csa13g008530.1 170 GTIYVNAKQYHGIIRRRLSRAKAEK---L-SRCRKPYIHHSRHLHAMRRPRGSGGRF 222 689*******************9...6.888*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-29	167	225	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	30.973	168	225	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-24	171	222	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	173	193	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MLSYPNLDCY FRSFNSAATS TCGSFSLFLW TFYWRSMQTE ELLSPPQTPW WNAFGSQPLT 60 TESLSGDASD SLAEVKADTP ETEQGVVDKQ SSTTLLTFSP GGKKSSQDVP KPHVAFTMQA 120 ACFEFGFARP VIYTKHPHVE QYYGVLSAYG PQRSSGRVML PLKMETEEDG TIYVNAKQYH 180 GIIRRRLSRA KAEKLSRCRK PYIHHSRHLH AMRRPRGSGG RFLNTKKVDA TKPSNSQSSE 240 VFHPENRTMN SSREANMPNL SGSEVTSMDY FLSSSVYTPS GMVMPIKWNA ATVDTGCYNL 300 NT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	8e-16	172	223	5	60	HAPB protein
4g92_A	8e-16	172	223	5	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g008530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084643	0.0	AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452583.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_010452584.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like
Swissprot	Q8LFU0	1e-170	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	R0H8U3	0.0	R0H8U3_9BRAS; Uncharacterized protein
STRING	XP_010452583.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-173	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]