PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28059.8 Da    PI: 4.5512
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.9e-131248541
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    n+  r  ++ kR++g+ KK +ELS+LCd++++++++ 
  Csa13g008520.1 12 NEKARRLSLEKRLAGLVKKTKELSILCDMRACLVVYD 48
                    7788999***************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-6159IPR002100Transcription factor, MADS-box
CDDcd002667.50E-18284No hitNo description
SuperFamilySSF554553.79E-15993IPR002100Transcription factor, MADS-box
PfamPF003199.2E-121248IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.761247IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGKRKTPTTW ANEKARRLSL EKRLAGLVKK TKELSILCDM RACLVVYDRE VDQLEVWPAP  60
QTAKSLFDKF YSLTDHERNM KAVDPESFIQ TNIQKLEKKI ADTRKAITEI EMDNLMLELS  120
LGRPLADLSP TEIDKLLSYT GKKIMCLRKE MGSAEQLDMS VDEESLGDAT LRASNVPSAG  180
WGGNVMETGS MYYFDQWGSA DPEVQEPSDE THLPTMVTGM DLNMEPAVGD KNLVGTSKGE  240
SSKAAAGAED DAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g008520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452582.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLQ9FG208e-92Q9FG20_ARATH; AGAMOUS-like 96
STRINGXP_010452582.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-89AGAMOUS-like 96