PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g008230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 329aa MW: 36728.4 Da PI: 7.5975 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 105.6 | 2.6e-33 | 87 | 200 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k ltpsdv+k++rlv+pk++ae++ ++++e+++ l++ede+g+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v Csa13g008230.1 87 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgasdtSSSSEKGMLLSFEDETGKAWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVV 181 99***********************************9999777789************************************************ PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 F++++++ ++l+++++r+ Csa13g008230.1 182 FFQRHRSDIRRLFIGWRRR 200 ***98889999*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-40 | 83 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.05E-29 | 85 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-26 | 86 | 189 | No hit | No description |
Pfam | PF02362 | 1.6E-30 | 87 | 200 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.916 | 87 | 201 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-25 | 87 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
SYYISTTSTH LSLSPNHLSL SLYTTLHSLS LYLFRFLSPR KMSVNHYSTD HHHTLLWQQQ 60 QHRHTTDTSE ATTTATWLND DLKESLFEKS LTPSDVGKLN RLVIPKQHAE KYFPLNAVVV 120 SSGASDTSSS SEKGMLLSFE DETGKAWRFR YSYWNSSQSY VLTKGWSRFV KDKQLDPGDV 180 VFFQRHRSDI RRLFIGWRRR GQGSSSSSAP ATNSATSMAA PSYRQIHHAS TNYSNPPSHS 240 EFSHYGAAVA TAAEETHSTP SSSAVAGGSS RTLRLFGVNL ECQMDENDGD DSVAAAAAVE 300 SPDGYYGQNM YYYYSQPHNM NIAFTGER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-50 | 83 | 200 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-50 | 83 | 200 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g008230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 0.0 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452542.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X1 | ||||
Swissprot | Q9FNI3 | 1e-154 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A178UF66 | 1e-157 | A0A178UF66_ARATH; AP2/B3-like transcriptional factor family protein | ||||
TrEMBL | A0A384L0Y1 | 1e-157 | A0A384L0Y1_ARATH; DPA4 | ||||
STRING | XP_010452542.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-122 | B3 family protein |