PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 183aa    MW: 20595.9 Da    PI: 5.7442
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.44.1e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dCv++pyf  e+ +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ +l++e+
  Csa13g008070.1   7 SCGACKFLRRKCNRDCVFSPYFSYEEaSSHFAAVHKVFGASNVSKHLLQLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEI 101
                     6*********************998868******************************************************************9 PP

          DUF260  95 allkee 100
                     + l+++
  Csa13g008070.1 102 DFLGSQ 107
                     988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4416108IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EEASSHFAAV HKVFGASNVS KHLLQLPLHQ  60
RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IDFLGSQMTN FSYSNQNGSQ  120
LNNVPEFVNQ MTVDTTSFVD ESLLNYNEEG RNCLDGFFTN SDETLVNHTW LPDMDYYYAP  180
HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3631187121LOB family transfactor Ramosa2.1
5ly0_B9e-3631187121LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g008070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738570.0AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452521.11e-137PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS81e-117LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ361e-120D7LZ36_ARALL; Predicted protein
STRINGXP_010452521.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-119LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]