PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g006720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 220aa    MW: 24776.5 Da    PI: 6.8717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g006720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+ + +a  +++ g   +W++Ia  +   +++ ++++++
   Csa13g006720.1  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLH--KSAGEVREHY 47
                     7*******************************7..9********9 PP
2Myb_DNA-binding42.91.1e-13102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
   Csa13g006720.1 102 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 146
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.431155IPR017930Myb domain
SMARTSM007171.6E-7253IPR001005SANT/Myb domain
SuperFamilySSF466899.87E-12458IPR009057Homeodomain-like
PfamPF002491.4E-5548IPR001005SANT/Myb domain
CDDcd001672.64E-6651No hitNo description
PROSITE profilePS5129418.26195151IPR017930Myb domain
SuperFamilySSF466893.07E-1697152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1698150IPR006447Myb domain, plants
SMARTSM007177.0E-999149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10101145IPR009057Homeodomain-like
PfamPF002491.7E-11102146IPR001005SANT/Myb domain
CDDcd001673.72E-8102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLHKSA GEVREHYEAL VHDVFEIDAG  60
RVDVPDYMDD SAAAAASAGW DSAGQISFGS KHADSERKRG TPWTENEHKL FLIGLKRYGK  120
GDWRSISRNV VVTRTPTQVA SHAQKYFLRQ NSVKKERKRS SIHDITTVDT TLAMPGSNMD  180
WTGQHGSPVH APQQQQQIMS EFGQQLTTPG HFEDFGFRM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g006720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0509760.0AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
GenBankAY0911770.0AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452376.11e-164PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7LXM51e-148D7LXM5_ARALL; Uncharacterized protein
STRINGXP_010452376.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-140MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]