PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g006630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 302aa    MW: 33822.1 Da    PI: 4.0502
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g006630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-10238339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i nk  r v fskR  g+  KA+E++ L +a++a++ 
  Csa13g006630.1  2 IGNKDSRAVAFSKRTRGLYSKASEICLLSNAQIAILA 38
                    7899******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-4155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.054137IPR002100Transcription factor, MADS-box
CDDcd002669.30E-17270No hitNo description
SuperFamilySSF554552.88E-11267IPR002100Transcription factor, MADS-box
PfamPF003196.4E-10251IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MIGNKDSRAV AFSKRTRGLY SKASEICLLS NAQIAILATP VSSNSNVSFY TFGHSSVDNV  60
VAAFLANQRP REDDLGLGFW WEDERLAKLE DPEELRDAMN SMSKMLQDLK ELPFNALENR  120
RDCEDVEKKG LLHGTHQNHT LNPHSCCDNK NNYALLENVD GCNQELDIDQ ITDFEAESTK  180
SKSSSMNSEL ENISMVTPNQ NSFSDSKAVI SDNNNINNNL VSENWDEFIQ ELDLDQIIDF  240
ETNYMKSLEM DDVSMVTTKN QDLGSNSETL EDGGLVTHID LDEDNLCFSD YFNELTSSAP  300
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g006630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490384.11e-164PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-110A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-110Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010490384.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-108AGAMOUS-like 99