PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g006350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 24226.1 Da PI: 8.6085 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H Csa13g006350.1 84 YKCGVCDKAFSSYQALGGHKASH 106 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.46E-9 | 83 | 106 | No hit | No description |
SMART | SM00355 | 0.034 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-12 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 84 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.46E-9 | 141 | 168 | No hit | No description |
SMART | SM00355 | 0.35 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-11 | 146 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.159 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001047 | Molecular Function | core promoter binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MALEALTSPR LASQMPTVFQ DSGVGFHGSK GKRSKRSRSE FDRHSLTEDE YIALCLMLLA 60 RDGDRTHDVN LPSSPALFPP TPIYKCGVCD KAFSSYQALG GHKASHRKNF SLSQPAGGDE 120 LPTSSAITTS GSSGGGGGAG SVVKSHVCSI CHKSFATGQA LGGHKRCHYE GKTGGSSSVS 180 NSEGVGSTSH VSSSHRGFDL NIPLIPEFSM VSGEDEVMSP MPAKKLKHNS S* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00622 | PBM | Transfer from AT5G04340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g006350.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF022658 | 0.0 | AF022658.1 Arabidopsis thaliana putative c2h2 zinc finger transcription factor mRNA, complete cds. | |||
GenBank | AK118868 | 0.0 | AK118868.1 Arabidopsis thaliana At5g04340 mRNA for putative C2H2 zinc finger transcription factor, complete cds, clone: RAFL21-19-J24. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452330.1 | 1e-168 | PREDICTED: zinc finger protein ZAT6-like | ||||
Swissprot | O22533 | 1e-110 | ZAT6_ARATH; Zinc finger protein ZAT6 | ||||
TrEMBL | A0A178UKV2 | 1e-106 | A0A178UKV2_ARATH; ZAT6 | ||||
STRING | XP_010452330.1 | 1e-168 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04340.1 | 1e-86 | zinc finger of Arabidopsis thaliana 6 |