PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g003870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 24350.3 Da PI: 7.6612 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.3e-17 | 75 | 127 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq+ Le F+++ +++ e++ +L+++lgL+ rq vWFqNrRa++k Csa13g003870.1 75 NKRLTSEQIASLEVSFQEDIKLDSERKLKLSRELGLQPRQTAVWFQNRRARWK 127 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.5e-36 | 73 | 161 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE sF+e+ kL++erK +l+reLglqprq avWFqnrRAR+k k+lE+ y++L+++yda+ +en++L +ev++Lr+ Csa13g003870.1 73 KKNKRLTSEQIASLEVSFQEDIKLDSERKLKLSRELGLQPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWKENQMLYDEVKKLRA 161 589************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-17 | 57 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.131 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 72 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.12E-13 | 73 | 130 | No hit | No description |
Pfam | PF00046 | 1.0E-14 | 74 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 75 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEWSTTSNVQ NERDPFMPPP RLESNWLHSF NYDLFAGNSY THAAVTQTGP VPESEKMINT 60 YHCDSSNNNE MIKKNKRLTS EQIASLEVSF QEDIKLDSER KLKLSRELGL QPRQTAVWFQ 120 NRRARWKVKH LEESYDSLRQ EYDAVWKENQ MLYDEVKKLR AIILRDQGLM MNINQIAGGG 180 QTNGIGGYNN SPMIVASSRW TPISQPPNPW * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g003870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 1e-127 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 1e-127 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456386.1 | 1e-157 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-81 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A077B3F2 | 1e-116 | A0A077B3F2_9BRAS; RCO-A | ||||
STRING | XP_010456386.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 8e-79 | homeobox 51 |
Publications ? help Back to Top | |||
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