PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g003860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 83aa MW: 9887.13 Da PI: 9.4376 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.6 | 3.7e-12 | 32 | 64 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 +p ae++ +LAk+l+++ rq vWFqNrRa++k Csa13g003860.1 32 NPYAERKLKLAKELDMEPRQEAVWFQNRRARWK 64 78999***************************9 PP | |||||||
2 | HD-ZIP_I/II | 67.1 | 4e-22 | 35 | 78 | 26 | 69 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69 erK +la+eL+++prq avWFqnrRAR+k k+lE y++Lk++ Csa13g003860.1 35 AERKLKLAKELDMEPRQEAVWFQNRRARWKVKHLEDSYDSLKSQ 78 58****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.3E-4 | 7 | 70 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.082 | 18 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-8 | 28 | 67 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-10 | 29 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-12 | 31 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-9 | 32 | 64 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MTSNVQTKRV DYMPSSWLKS NFSNSLCSFS YNPYAERKLK LAKELDMEPR QEAVWFQNRR 60 ARWKVKHLED SYDSLKSQEY DV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g003860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879296.1 | 2e-19 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-15 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | D7LWT8 | 7e-18 | D7LWT8_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_290 | 1e-18 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-18 | homeobox 51 |
Publications ? help Back to Top | |||
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