PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g003850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28704.5 Da    PI: 9.6054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g003850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1894146456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + ++t+ ql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Csa13g003850.1  94 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 146
                     45699***********************************************9 PP
2HD-ZIP_I/II116.41.7e-3793183292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+
  Csa13g003850.1  93 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRAILR 183
                     9**************************************************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1884150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-1986151IPR009057Homeodomain-like
PROSITE profilePS5007116.48788148IPR001356Homeobox domain
SMARTSM003894.5E-1790152IPR001356Homeobox domain
CDDcd000861.05E-1493149No hitNo description
PfamPF000464.7E-1694146IPR001356Homeobox domain
PRINTSPR000314.5E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000314.5E-5128144IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEWSTTSNVE NVRVAFMPPP WAPECSSFNS LHSFGFDPYA GIFIRHTNTK YIRNLYTPPA  60
DTQTGPVIAV PEPEKIMNAY RFPNNNNNEM MIKKKRLTSG QLASLERSFQ EEIKLDSDRK  120
VKLSRELGLQ PRQIAVWFQN RRARWKAKQL EQLYDSLRQE YDVVSREKQM LHEEVKKLRA  180
ILRDQGLIKK QFSSSTIKVS NEEDTAELPS IVIAHPRTEN LNSGGNQIYG TEQYTNPMMA  240
ASSGWSSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g003850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3520291e-146EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452275.11e-174PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-144ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLR0FIS61e-148R0FIS6_9BRAS; Uncharacterized protein
STRINGXP_010452275.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-142homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]