PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g081820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 477aa MW: 52953.3 Da PI: 4.6753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g081820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.9	1.1e-41	235	332	31	129
NAM 31 eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 +++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkg+kt+Wvmhe Csa12g081820.1 235 ATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK-GKSLVGMKKTLVFYKGRAPKGVKTNWVMHE 328 3579************888999************************************.999*********************** PP NAM 126 yrle 129 yrle Csa12g081820.1 329 YRLE 332 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.001	198	356	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-47	233	356	IPR003441	NAC domain
Pfam	PF02365	5.3E-17	248	331	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MHGDGGAYGS RYQERFQGST WGQKKQFTAV ESSGSGGQRG SQMLSGELEG QVPSFNLNRK 60 GMGPVWPKPL YKVKQGSAVK QNAVAKRSQE EEDAVGRGST SQAVTVAPEE TLTGLVKEGE 120 ETGFMEENDD LLEEGEYPEG DDAVIPDTEL GKEDDTLTEQ GTDSQSDMTG DSQGKPPVLV 180 LPDSVLGLVN NALADVKLVD PVQNNCSKEE LDNTKKLTNY WXXXXXXXFN TFFSATAIGE 240 VDLNKIEPWD LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKGK 300 SLVGMKKTLV FYKGRAPKGV KTNWVMHEYR LEGKYSIENL PQTAKNEWVI CRVFQKRADG 360 TKIPMSMLDS RINNRIEPAG LPLLMDCSQQ DSFPGSSSTH VTCFSDQETE DKSLVHESKD 420 GSGSLFYSDP LFLQDNYSLM KMLLDGQETQ YPGRSFDGHN PSGLAGAEEL DCVWNF*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MHGDGGAYGS RYQERFQGST WGQKKQFTAV ESSGSGGQRG SQMLSGELEG QVPSFNLNRK  60
GMGPVWPKPL YKVKQGSAVK QNAVAKRSQE EEDAVGRGST SQAVTVAPEE TLTGLVKEGE  120
ETGFMEENDD LLEEGEYPEG DDAVIPDTEL GKEDDTLTEQ GTDSQSDMTG DSQGKPPVLV  180
LPDSVLGLVN NALADVKLVD PVQNNCSKEE LDNTKKLTNY WXXXXXXXFN TFFSATAIGE  240
VDLNKIEPWD LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKGK  300
SLVGMKKTLV FYKGRAPKGV KTNWVMHEYR LEGKYSIENL PQTAKNEWVI CRVFQKRADG  360
TKIPMSMLDS RINNRIEPAG LPLLMDCSQQ DSFPGSSSTH VTCFSDQETE DKSLVHESKD  420
GSGSLFYSDP LFLQDNYSLM KMLLDGQETQ YPGRSFDGHN PSGLAGAEEL DCVWNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-40	233	362	44	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-40	233	362	44	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-40	233	362	44	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-40	233	362	44	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-40	233	362	47	174	NAC domain-containing protein 19
3swm_B	5e-40	233	362	47	174	NAC domain-containing protein 19
3swm_C	5e-40	233	362	47	174	NAC domain-containing protein 19
3swm_D	5e-40	233	362	47	174	NAC domain-containing protein 19
3swp_A	5e-40	233	362	47	174	NAC domain-containing protein 19
3swp_B	5e-40	233	362	47	174	NAC domain-containing protein 19
3swp_C	5e-40	233	362	47	174	NAC domain-containing protein 19
3swp_D	5e-40	233	362	47	174	NAC domain-containing protein 19
4dul_A	4e-40	233	362	44	171	NAC domain-containing protein 19
4dul_B	4e-40	233	362	44	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269\|PubMed:15295076, ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:21303842, ECO:0000269\|PubMed:23340744, ECO:0000269\|PubMed:23459204, ECO:0000269\|PubMed:9351240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g081820.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19608714, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:20404534, ECO:0000269\|PubMed:21511905, ECO:0000269\|PubMed:22930749}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056327	0.0	AY056327.1 Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds.
GenBank	AY084635	0.0	AY084635.1 Arabidopsis thaliana clone 113779 mRNA, complete sequence.
GenBank	AY091191	0.0	AY091191.1 Arabidopsis thaliana putative NAM/CUC2 protein (At5g39610) mRNA, complete cds.
GenBank	AY174163	0.0	AY174163.1 Arabidopsis thaliana ecotype Columbia no apical meristem-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451817.1	0.0	PREDICTED: NAC domain-containing protein 92-like, partial
Swissprot	Q9FKA0	1e-163	NAC92_ARATH; NAC domain-containing protein 92
TrEMBL	X2FXQ1	1e-168	X2FXQ1_ARAAE; NAC2
STRING	XP_010451817.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	1e-164	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Khan M,Rozhon W,Poppenberger B The role of hormones in the aging of plants - a mini-review. Gerontology, 2014. 60(1): p. 49-55 [PMID:24135638] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J., 2015. 81(3): p. 377-87 [PMID:25440717] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Kim H, et al. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453 [PMID:30065116]