PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 532aa    MW: 58410.1 Da    PI: 7.3358
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.33.9e-39139198261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Csa12g081790.1 139 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 198
                     7899*****************************************************986 PP
2zf-Dof124.33.9e-39211270261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Csa12g081790.1 211 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 270
                     7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31135196IPR003851Zinc finger, Dof-type
PfamPF027017.8E-32141197IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.612143197IPR003851Zinc finger, Dof-type
PROSITE patternPS013610145181IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-31207268IPR003851Zinc finger, Dof-type
PfamPF027017.8E-32213269IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.612215269IPR003851Zinc finger, Dof-type
PROSITE patternPS013610217253IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MADPAIKLFG KTIPLPELGV VVVDSSCSSF TENQDQNPLV RLSDSCTGDD DDIDEMGDSG  60
LGEGGGGESE SDKKEIQEEK DNDCQDELLK HESNEVTATS GVTDKTETTK AAKTNEESSP  120
NETGGNTTAC SQEAKLKKPD KILPCPRCNS METKFCYYNN YNVNQPRHFC KKCQRYWTAG  180
GTMRNVPVGA GRRKNKSPAS HYNRHAKLKK PDKILPCPRC NSMETKFCYY NNYNVNQPRH  240
FCKKCQRYWT AGGTMRNVPV GAGRRKNKSP ASHYNRHVSI TSAEAMQKAA RTDLQHPNGA  300
NLLTFGSDSV LCESMASGLN LAEKSMLKTQ TTLQEPNEGL KVTVPLNPPN EEAGTVSPLP  360
KVPCFPGPPP AWPYAWNGVS WTVLPFYPPP AYWSCPGVSP GAWNSFTWMP QPNSPSGSSP  420
NSPTLGKHSR DENADEACEE TESLGREKSK PERCLWVPKT LRVDDPEEAA KSSIWETLGI  480
KKDENADTFG AFRSSTKEKS SLSEGKLPGR RLELQANPAA LSRSTNFHET S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122430.0AB012243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIJ24.
GenBankBT0157910.0BT015791.1 Arabidopsis thaliana At5g39660 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089242.10.0PREDICTED: cyclic dof factor 2-like
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A178UGH80.0A0A178UGH8_ARATH; CDF2
STRINGXP_010441080.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]