PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 289aa    MW: 33060.9 Da    PI: 7.4645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.2e-22756251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +++++s +++++s+R+++++ KAe LS+LC+++v+vi+++++g l+++++
  Csa12g081610.1  7 SSSSYSLASTSLSNRLETVFRKAEQLSILCQIDVCVIYYGPKGDLKTFPN 56
                    799*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0027257IPR002100Transcription factor, MADS-box
PfamPF003193.7E-111554IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.1621658IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-121689IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRSLPSSSSS YSLASTSLSN RLETVFRKAE QLSILCQIDV CVIYYGPKGD LKTFPNDKDK  60
VRNMAMRYIQ LNEALRNKKR VNLSEFLKDK GGLENPNKRR KTCPKDKGLD VLIQDKGLDV  120
LIQSLELNIS TFQERVRFLE SSSSSSSSQN HQTQSLNPNP RQFSLFMYNH RDNTLSQIPL  180
SDYDRMSDIT NNSFQHPCYS GVQDSVNNFG MNQLMHKEFY GYDHNMCSMD SINRNSFQHP  240
CEENYSAVQE SVDNSGLMQH EVYGYDQNLC TSNFTYRNVP QPSFSNPV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451805.10.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL02e-81AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJI63e-94D7MJI6_ARALL; Predicted protein
STRINGXP_010451805.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.12e-80AGAMOUS-like 76
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]