PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 364aa    MW: 41700.6 Da    PI: 8.8757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.5e-52171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  
  Csa12g081560.1  17 LPGFRFHPTDEELVNFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLd 110
                     69**************************9.89***************8778899**************************************985 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Csa12g081560.1 111 STRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 143
                     6677***************************98 PP
2NAM29.42.3e-09146170104128
             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     k+Lvfy+gra kg+ktdW+mhe+rl
  Csa12g081560.1 146 KSLVFYRGRAAKGVKTDWMMHEFRL 170
                     79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5615146IPR003441NAC domain
PROSITE profilePS5100553.91316215IPR003441NAC domain
PfamPF023651.7E-2518143IPR003441NAC domain
SuperFamilySSF1019413.01E-10146215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDDEESNNIE RYDDVVLPGF RFHPTDEELV NFYLKRKVLH KSLPFELIKK VDIYKYDPWD  60
LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS  120
LVFYRGRAAK GVKTDWMMHE FRLPSKSLVF YRGRAAKGVK TDWMMHEFRL PSVSDSHHST  180
YPNYNNKKQN LNNDNNTSKE VPSSDAWAIC RIFKKTNAVS SQRSIPQSWV YPTIPDTNQY  240
NSQSQSHNTT TLLASSDVLS HISTRQNLIT SPVNEHTSFT ESAVAYFASQ MLGVPYNTAR  300
TGDALFVRNS ETGDTLFLSN NENNYFNNLT GALTHELPNV RSMVMEEETT VSEMSATSYS  360
TNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-521814317140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-148AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-148CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450764.20.0PREDICTED: putative NAC domain-containing protein 94, partial
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLR0F9M70.0R0F9M7_9BRAS; Uncharacterized protein
STRINGXP_010450764.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94