PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 94aa    MW: 10618 Da    PI: 8.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-0725602054
                    HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      +Lr++lP+   + +s K+s + +L+++++YI+sL
  Csa12g081510.1 25 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRSL 60
                    579*******999*********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.801560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-72076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-72380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-52460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSNRRSSRQS SSAPRISDDQ MIDLVTKLRQ ILPEIGQRRR SDKVSASKVL QETCNYIRSL  60
NREVDNLSER LSQLLESVDE DSPEAAVIRS LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882461e-101AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435835.11e-58PREDICTED: transcription factor PRE1 isoform X1
RefseqXP_010441099.11e-58PREDICTED: transcription factor PRE1 isoform X1
RefseqXP_010450758.11e-58PREDICTED: transcription factor PRE1
RefseqXP_019086599.11e-58PREDICTED: transcription factor PRE1 isoform X2
RefseqXP_019088176.11e-58PREDICTED: transcription factor PRE1 isoform X2
SwissprotQ9LJX16e-50PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GTI34e-52A0A087GTI3_ARAAL; Uncharacterized protein
STRINGXP_010435835.15e-58(Camelina sativa)
STRINGXP_010441099.15e-58(Camelina sativa)
STRINGXP_010450758.15e-58(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.12e-47bHLH family protein