PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g081080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 613aa MW: 68586.7 Da PI: 5.4625

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g081080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	25	79	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q++ Le++F ++++p++++r++L ++l+L +qVk+WFqN+R++ k Csa12g081080.1 25 RTGHRHTPQQIQGLEAFFMECPHPDEAQRQQLCEELKLGPDQVKFWFQNKRTQCK 79 555789*********************************************9988 PP
2	START	93.7	3.7e-30	140	290	66	206
CCCGGCT-TT-S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS START 66 lddkeqWdetla....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148 l+d e+W+e ++ ka+tl v+ s ++l +m +l lsplvp R+f++vR++++ ++g+w+i+dvS + ++ ++s+ ++ Csa12g081080.1 140 LKDQEKWKELFPtmvnKAKTLYVLGSElpirencNILRVMWEKLHILSPLVPpREFMIVRCCQEISKGVWIIADVSHNDFDFDFVNASC---YKR 231 5666699988888888********************************************************887777776655555...559 PP SEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 pSg+li++++n skv w+ehv++ +l h ++r l++ g gak+w atl+r ce+ Csa12g081080.1 232 PSGCLIQSMPNAQSKVMWIEHVEVAHKLDtHKIYRELLSGGSGYGAKRWIATLERMCER 290 ************************99*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-18	9	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-19	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.532	21	81	IPR001356	Homeobox domain
SMART	SM00389	3.3E-18	23	85	IPR001356	Homeobox domain
CDD	cd00086	1.69E-17	24	82	No hit	No description
Pfam	PF00046	9.8E-17	26	79	IPR001356	Homeobox domain
SMART	SM00234	2.7E-9	75	290	IPR002913	START domain
PROSITE profile	PS50848	28.499	134	293	IPR002913	START domain
SuperFamily	SSF55961	1.51E-18	139	291	No hit	No description
Pfam	PF01852	4.2E-24	140	290	IPR002913	START domain
SuperFamily	SSF55961	2.2E-6	311	471	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MENDGSGSSC NEQYASEDSK QNGKRTGHRH TPQQIQGLEA FFMECPHPDE AQRQQLCEEL 60 KLGPDQVKFW FQNKRTQCKA QEERADNLSL RGENEILENE NEAMLGALIS VLCPDCGGPP 120 FGIEERKLNF QKLLLENARL KDQEKWKELF PTMVNKAKTL YVLGSELPIR ENCNILRVMW 180 EKLHILSPLV PPREFMIVRC CQEISKGVWI IADVSHNDFD FDFVNASCYK RPSGCLIQSM 240 PNAQSKVMWI EHVEVAHKLD THKIYRELLS GGSGYGAKRW IATLERMCER MALTSNLTLP 300 ASDWSEVIRT GEERRRVLKL GERMIMNFNE MLTMSGKVDF PQQSKCGVRV SMRMNLEAGQ 360 PPGLIVSAAS SLRIPLPPVQ VFDILRKLDT RQQWDVLAYG TVVTEIARIA TGSSETNCLS 420 ILRVHPTQEE NNNGKMIAQE SDKDDMLMLQ DCYMDALGGM LVYAPMDMAT MDTTLSGADV 480 KISDIPILPS DDGTRLRQGR HIDAARLLMD ALGGMLVYAP MDMATMDTTL SGADVKISDI 540 PILPSGFIIS SDGRRSTVED GGTLLTLAFQ ILVSGKTSRS REVNERSVDR VSALISSTVQ 600 RIKGLLNCPD QF*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MENDGSGSSC NEQYASEDSK QNGKRTGHRH TPQQIQGLEA FFMECPHPDE AQRQQLCEEL  60
KLGPDQVKFW FQNKRTQCKA QEERADNLSL RGENEILENE NEAMLGALIS VLCPDCGGPP  120
FGIEERKLNF QKLLLENARL KDQEKWKELF PTMVNKAKTL YVLGSELPIR ENCNILRVMW  180
EKLHILSPLV PPREFMIVRC CQEISKGVWI IADVSHNDFD FDFVNASCYK RPSGCLIQSM  240
PNAQSKVMWI EHVEVAHKLD THKIYRELLS GGSGYGAKRW IATLERMCER MALTSNLTLP  300
ASDWSEVIRT GEERRRVLKL GERMIMNFNE MLTMSGKVDF PQQSKCGVRV SMRMNLEAGQ  360
PPGLIVSAAS SLRIPLPPVQ VFDILRKLDT RQQWDVLAYG TVVTEIARIA TGSSETNCLS  420
ILRVHPTQEE NNNGKMIAQE SDKDDMLMLQ DCYMDALGGM LVYAPMDMAT MDTTLSGADV  480
KISDIPILPS DDGTRLRQGR HIDAARLLMD ALGGMLVYAP MDMATMDTTL SGADVKISDI  540
PILPSGFIIS SDGRRSTVED GGTLLTLAFQ ILVSGKTSRS REVNERSVDR VSALISSTVQ  600
RIKGLLNCPD QF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g081080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450732.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG8-like
Swissprot	Q9M9P4	0.0	HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBL	A0A178VIV7	0.0	A0A178VIV7_ARATH; HDG8
TrEMBL	R0HRS6	0.0	R0HRS6_9BRAS; Uncharacterized protein
STRING	XP_010450732.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12791	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03260.1	0.0	homeodomain GLABROUS 8