PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g079750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 195aa    MW: 21956 Da    PI: 8.9219
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g079750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-112361448
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d+v+ +G g+W++Ia++ g++R++k+c++rw +yl
   Csa12g079750.1  2 DYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYL 36
                     89*******************************97 PP
2Myb_DNA-binding60.53.5e-194287148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T +E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
   Csa12g079750.1 42 RGNFTDQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 87
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-18143IPR009057Homeodomain-like
PROSITE profilePS5129413.031136IPR017930Myb domain
SMARTSM007171.5238IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-24283IPR009057Homeodomain-like
CDDcd001674.77E-7236No hitNo description
PfamPF002497.3E-10236IPR001005SANT/Myb domain
PROSITE profilePS5129427.4653791IPR017930Myb domain
SMARTSM007172.1E-184189IPR001005SANT/Myb domain
PfamPF002495.6E-184287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-274491IPR009057Homeodomain-like
CDDcd001671.31E-144487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDYVRTHGQG HWNRIAKKTG LKRCGKSCRL RWMNYLSPTV NRGNFTDQEE DLIIRLHKLL  60
GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGLGDHSSGA KPACEAESPP SLALITTTSS  120
NHQEIPGEKV STVRFDTLVD ESKLKPKPKP VHSLPTDVEV ATTVPNLFDT FWVLEDDFEL  180
SSLTMMDFTS GYCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2319119108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g079750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196310.0AY519631.1 Arabidopsis thaliana MYB transcription factor (At5g40330) mRNA, complete cds.
GenBankBT0252850.0BT025285.1 Arabidopsis thaliana At5g40330 mRNA, complete cds.
GenBankZ681580.0Z68158.1 A.thaliana mRNA for myb-related protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450681.11e-144PREDICTED: transcription factor MYB23
SwissprotQ962761e-131MYB23_ARATH; Transcription factor MYB23
TrEMBLR0F1W91e-134R0F1W9_9BRAS; Uncharacterized protein
STRINGXP_010450681.11e-144(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.11e-133myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]