PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g079710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 200aa MW: 22743.4 Da PI: 7.2934

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g079710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.6e-17	61	104	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++ Csa12g079710.1 61 RGNITAEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 104 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.68	15	55	IPR017877	Myb-like domain
SMART	SM00717	2.5	19	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	25	62	IPR009057	Homeodomain-like
CDD	cd00167	0.00167	26	55	No hit	No description
SuperFamily	SSF46689	4.6E-22	35	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.092	56	110	IPR017930	Myb domain
SMART	SM00717	1.0E-14	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	61	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-23	63	109	IPR009057	Homeodomain-like
CDD	cd00167	8.51E-12	65	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEKRVGGTGG SGSGDADVRK GPRTMEEDLI LINYITNHGL KRTGKSCRLR WLNYLRPDVR 60 RGNITAEEQL IIMELHAKWG NRWSKIAKHL PGRTDNEIKN FWRTKIQKYI IKNGETTTAG 120 SQSSEIINHH ATSTGQVLND TQEPIDTYSQ HANSIDHQLS YNTYVPESDS IMMPLSVDQS 180 EQNYWSVDDL WPMHLYNGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-23	14	110	1	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269\|PubMed:16805732, ECO:0000269\|PubMed:16972096, ECO:0000269\|PubMed:19091873, ECO:0000269\|PubMed:19325888, ECO:0000269\|PubMed:21447791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g079710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by jasmonate. {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF175987	1e-151	AF175987.1 Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete cds.
GenBank	AY519632	1e-151	AY519632.1 Arabidopsis thaliana MYB transcription factor (At5g40350) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435910.1	1e-137	PREDICTED: transcription factor MYB24-like
Swissprot	Q9SPG9	1e-111	MYB24_ARATH; Transcription factor MYB24
TrEMBL	R0H558	1e-112	R0H558_9BRAS; Uncharacterized protein
STRING	XP_010435910.1	1e-136	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-113	myb domain protein 24

Publications ? help Back to Top
Liu Z, et al. A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation. Mol Plant, 2015. 8(12): p. 1751-65 [PMID:26388305] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Huang H, et al. Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development. Front Plant Sci, 2017. 8: p. 1525 [PMID:28928760]