PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g078120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 370aa    MW: 41844.5 Da    PI: 9.2619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g078120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.8e-104084252
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                    +ykGV +   +g W A+I+       +kr++lg+f +a eAa a++ a  k
  Csa12g078120.1 40 KYKGVVQQQ-NGHWGAQICAD-----NKRIWLGTFKSAAEAATAYDSASIK 84
                    8****9888.8******9884.....5*******************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-154097IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-134098IPR016177DNA-binding domain
CDDcd000181.80E-204099No hitNo description
PfamPF008473.4E-64084IPR001471AP2/ERF domain
SMARTSM003802.6E-1340103IPR001471AP2/ERF domain
PROSITE profilePS5103216.2524097IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-13165283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-6168199IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-9169283No hitNo description
SuperFamilySSF1019361.44E-6230284IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTETETFLPL TKRMRFNEEP EKALVVASAT KTVTVPGNLK YKGVVQQQNG HWGAQICADN  60
KRIWLGTFKS AAEAATAYDS ASIKLPSFDA NSHRNFPWSD LTVHEREFQD TYELEAVLNM  120
IRDGSYQHKF RDFLKLRPQM VARINVGGSK QVRGEADQES DKCFSCTQLF QKVLTPSDVG  180
KVNRLVIPKK FEKNKFSPKY SILRPAPSTT CLGHLDILSR VIGNSLGSQQ FSRVLGNSSR  240
VLGNSPRVLD IPSDTRQSIV FTRGLNAFVK EKNLKEKDII VFYDCDVPSD AKTLEGQSKN  300
FKMIDVHYFS GNGFMVPEEV SKTAQESSGE EMKTGNLFSS KLEDEEPKSE ENNYAVWNFK  360
RFFSWFLRK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g078120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451760.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-141RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-147D7KGR6_ARALL; Uncharacterized protein
STRINGXP_010451760.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-134RAV family protein