PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g063080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 275aa    MW: 31482.5 Da    PI: 9.8586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g063080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
   Csa12g063080.1 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   Csa12g063080.1  73 RGQITPHEESIILNLHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5161571IPR017930Myb domain
SuperFamilySSF466894.12E-3019114IPR009057Homeodomain-like
SMARTSM007171.1E-161969IPR001005SANT/Myb domain
PfamPF002492.3E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-242174IPR009057Homeodomain-like
CDDcd001673.76E-122267No hitNo description
PROSITE profilePS5129419.5172122IPR017930Myb domain
SMARTSM007179.1E-1572120IPR001005SANT/Myb domain
PfamPF002491.3E-1373117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2475121IPR009057Homeodomain-like
CDDcd001672.31E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSWWGVKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ESIILNLHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KAKPATNNEE KTKNRLLKRQ QFKQQRELEL QQEQQLFQFD QLDMKKIIAL LEDNNSSSSS  180
DGGSNVFYAP HQITHSSKPL GYNNPNSLEE QLQGRFAPVN IPDANTMNED NAIWDGFWNM  240
DGVDGHGGNL SAVAATAACG PRKPYFHNLV IPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g063080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450200.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLR0GP771e-175R0GP77_9BRAS; Uncharacterized protein
STRINGXP_010450200.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-138myb domain protein 79