PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g061620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 116aa MW: 12731.5 Da PI: 9.8896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.6e-12 | 38 | 78 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Csa12g061620.1 38 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 78 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-15 | 28 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.173 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 32 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.66E-11 | 37 | 82 | No hit | No description |
Pfam | PF00010 | 3.7E-9 | 38 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
GQSLSNSSDD EKASVTSVKG KTIATKGTAT DTQSLYARKR REKINERLKT LQNLVPNGTK 60 VDISTMLEEA VHYVKFLQLQ IKLLSSEDDA NQSESFAFMK FLFLCRVAAS LAKLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g061620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493481 | 1e-114 | AB493481.1 Arabidopsis thaliana At1g27740 mRNA for hypothetical protein, partial cds, clone: RAAt1g27740. | |||
GenBank | AY085436 | 1e-114 | AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_564293.1 | 2e-52 | root hair defective 6-like 4 | ||||
Refseq | XP_002890747.1 | 2e-52 | transcription factor bHLH54 | ||||
Refseq | XP_006304444.1 | 2e-52 | transcription factor bHLH54 | ||||
Refseq | XP_010499270.1 | 7e-53 | PREDICTED: transcription factor bHLH54-like | ||||
Swissprot | Q8LEG1 | 2e-53 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | A0A1J3GSA2 | 3e-53 | A0A1J3GSA2_NOCCA; Transcription factor bHLH54 (Fragment) | ||||
TrEMBL | A0A1J3IJB7 | 2e-52 | A0A1J3IJB7_NOCCA; Transcription factor bHLH54 (Fragment) | ||||
STRING | AT1G27740.1 | 7e-52 | (Arabidopsis thaliana) | ||||
STRING | fgenesh2_kg.1__2933__AT1G27740.1 | 8e-52 | (Arabidopsis lyrata) | ||||
STRING | Bostr.15697s0100.1.p | 7e-52 | (Boechera stricta) | ||||
STRING | XP_006304444.1 | 7e-52 | (Capsella rubella) | ||||
STRING | XP_010499270.1 | 3e-52 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 4e-45 | root hair defective 6-like 4 |