PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g057620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 265aa    MW: 29514 Da    PI: 4.5712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g057620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.16.4e-1026581850
                    HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeys 50
                     g  KKA ELSvLC+  v  i +++++ l+ ++
  Csa12g057620.1 26 PGFKKKATELSVLCGNSVGFICYGPNNDLQVWP 58
                    57779*************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.9931361IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-131593IPR002100Transcription factor, MADS-box
PfamPF003191.1E-81857IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAPPRNFSDA DVDLKTKKNF FKKKFPGFKK KATELSVLCG NSVGFICYGP NNDLQVWPEP  60
QDNPQALSGI VGKFNAISDQ KRKNHACDLY DFVSDIKGLS VEDLRRHIDK LSSQLVGIKQ  120
RKTSMLRRGD SKNSKPKETE EDDHIRVSEN ATITNCNVAM MMPEDRLGFD EFPGYHETDS  180
SLGSYSAFTD VGVSDSSLFD PFTFGDYFPV PPTDNFGVDG VWDLCPMDLE FSSLFPGYDP  240
LSTDSFMSST YQTPVIEDNL ASVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g057620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089156.10.0PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG17e-83D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010451530.11e-156(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59810.13e-47AGAMOUS-like 50